A Special Purpose Exit Company (SPEC)

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Glafabra Therapeutics

Glafabra Therapeutics is a company striving to develop drugs that stop the progression of Fabry Disease. Loss of Function (LoF) in GLA, the causative gene of Fabry Disease, result in pain, renal failure, cardiovascular and cerebrovascular events, and early death. These LoF variants in GLA lead to a buildup of toxic metabolites (GB3 and other glycosphingolipids).  Currently in Fabry, there are two enzyme replacement therapies (ERT) at market, as well as a protein chaperone therapy.  With the currently marketed drugs, the therapeutic effect is limited and reduced lifespan remains expected for these patients.  As a result, improved therapeutics that can more adequately replace the gene function are needed. Some of the promising technologies in development are Adeno-Associated Virus (AAV) and Hematopoietic Stem-Cell Transplants (HSCT) as gene therapies to correct for the missing GLA protein in the patient.

Population Frequency

The GLA gene has 425 amino acids and 755 coding sequence variations have been clinically observed in the gene via ClinVar. 65% of the variants are pathogenic (Path = 493x) and 33% are variants of uncertain significance (VUS = 247x). Since VUS resolves to pathogenicity at about 30%, resolution of VUS will increase the numbers of affected patients by 17%. The total number of possible pathogenic variants predicted by AlphaMissense is 797 variants. As a result, it is likely an additional 5% more variants that have not yet been seen will be observed as pathogenic. The reported frequency of GLA pathogenic variations in the general population ranges between 1 to 1000 per 100,000 depending on ethnicity and/or severity, so the incidence of this genetic disease is quite high (PMID: 20301469). Because the GLA gene is X-linked, there is significant sex-specific differences and disease presentation in males is often more severe.

Translational Biomarkers 

In Fabry, an established biomarker is to monitor globotriaosylceramide (Gb3) levels with TLC or Mass Spec where observed levels of Gb3 at >0.1ug per mg creatinine are diagnostic correlates for renal manifestations of the disease (​​PMID: 34631425). Globotriaosylsphingosine (lyso-Gb3) is an alternative plasma biomarker that shows better correlation with the neurological phenotypes of Fabry (PMID: 25697597).  Fluorescent plate reader assays have been developed to quantify Gb3 levels in crude lipid isolates from cells (PMID: 34119486).

Drug Candidate

Gene therapies using HSCT have been developed for Fabry.  The method involves harvesting the Hematopoietic Stem Cells (HSCs) from a patient (autologous) and then genetically engineering the cells to express the missing alpha-galactosidase A, via a lentiviral vector engineered to express protein from the GLA gene. These Lentiviral transduced cells are verified by PCR for transgene levels prior to their reintroduction into the patient. Before reintroduction, the patient is conditioned by treatment with melphalan in an outpatient setting to remove a portion of the remaining HSCs in the patient (submyloablative) and make room for the genetically-engineered HS cells to thrive (engraftment). To perform the engraftment, the GLA-expressing HSCs are reintroduced into the submyloablated patient and the patient is monitored for levels of engraftment by PCR of Peripheral Blood Mononuclear Cells (PBMCs). Levels of gene function in PBMCs are monotored by by GLA enzyme activity assay and the levels of toxic metabolites (lyso-GB3 and GB3) are measured in PBMCs by mass spectrometry and platereader methods. In phase 1 clinical studies performed in Canada, gene therapy with HSCTs were found to be safe and had secondary endpoints of long durability, which was giving patient the ability to live for many years without the need to return to tradition ERT injection treatments.

GLA-Fabry variants

List of GLA variants repeatedly seen in Fabry:

22x of NM_000169.3(GLA):c.644A>G (p.Asn215Ser)

18x of NM_000169.3(GLA):c.335G>A (p.Arg112His)

13x of NM_000169.3(GLA):c.902G>A (p.Arg301Gln)

12x of NM_000169.3(GLA):c.334C>T (p.Arg112Cys)

10x of NM_000169.3(GLA):c.1087C>T (p.Arg363Cys)

10x of NM_000169.3(GLA):c.680G>A (p.Arg227Gln)

8x of NM_000169.3(GLA):c.1025G>A (p.Arg342Gln)

8x of NM_000169.3(GLA):c.337T>C (p.Phe113Leu)

7x of NM_000169.3(GLA):c.1066C>T (p.Arg356Trp)

7x of NM_000169.3(GLA):c.886A>G (p.Met296Val)

NM_000169.3(GLA):c.713G>A (p.Ser238Asn)

NM_000169.3(GLA):c.613C>A (p.Pro205Thr)

NM_000169.3(GLA):c.427G>C (p.Ala143Pro)

NM_000169.3(GLA):c.1117G>A (p.Gly373Ser)

NM_000169.3(GLA):c.974G>A (p.Gly325Asp)

NM_000169.3(GLA):c.272T>C (p.Ile91Thr)

NM_000169.3(GLA):c.101A>G (p.Asn34Ser)

NM_000169.3(GLA):c.982G>C (p.Gly328Arg)

NM_000169.3(GLA):c.966C>A (p.Asp322Glu)

NM_000169.3(GLA):c.966C>G (p.Asp322Glu)

NM_000169.3(GLA):c.801G>A (p.Met267Ile)

NM_000169.3(GLA):c.791A>T (p.Asp264Val)

NM_000169.3(GLA):c.668G>A (p.Cys223Tyr)

NM_000169.3(GLA):c.422C>T (p.Thr141Ile)

NM_000169.3(GLA):c.124A>C (p.Met42Leu)

NM_000169.3(GLA):c.118C>T (p.Pro40Ser)

NM_000169.3(GLA):c.1157A>C (p.Gln386Pro)

NM_000169.3(GLA):c.1118G>A (p.Gly373Asp)

NM_000169.3(GLA):c.870G>A (p.Met290Ile)

NM_000169.3(GLA):c.797A>T (p.Asp266Val)

NM_000169.3(GLA):c.776C>G (p.Pro259Arg)

NM_000169.3(GLA):c.695T>C (p.Ile232Thr)

NM_000169.3(GLA):c.610T>C (p.Trp204Arg)

NM_000169.3(GLA):c.547G>A (p.Gly183Ser)

NM_000169.3(GLA):c.413G>A (p.Gly138Glu)

NM_000169.3(GLA):c.290C>T (p.Ala97Val)

NM_000169.3(GLA):c.274G>T (p.Asp92Tyr)

NM_000169.3(GLA):c.125T>C (p.Met42Thr)

NM_000169.3(GLA):c.124A>G (p.Met42Val)

NM_000169.3(GLA):c.59C>A (p.Ala20Asp)

NM_000169.3(GLA):c.1072G>A (p.Glu358Lys)

NM_000169.3(GLA):c.1061T>A (p.Ile354Lys)

NM_000169.3(GLA):c.1018T>C (p.Trp340Arg)

NM_000169.3(GLA):c.983G>T (p.Gly328Val)

NM_000169.3(GLA):c.983G>C (p.Gly328Ala)

NM_000169.3(GLA):c.826A>G (p.Ser276Gly)

NM_000169.3(GLA):c.815A>G (p.Asn272Ser)

NM_000169.3(GLA):c.805G>A (p.Val269Met)

NM_000169.3(GLA):c.782G>T (p.Gly261Val)

NM_000169.3(GLA):c.770C>T (p.Ala257Val)

NM_000169.3(GLA):c.647A>G (p.Tyr216Cys)

NM_000169.3(GLA):c.620A>C (p.Tyr207Ser)

NM_000169.3(GLA):c.614C>T (p.Pro205Leu)

NM_000169.3(GLA):c.605G>A (p.Cys202Tyr)

NM_000169.3(GLA):c.548G>A (p.Gly183Asp)

NM_000169.3(GLA):c.484T>C (p.Trp162Arg)

NM_000169.3(GLA):c.444T>G (p.Ser148Arg)

NM_000169.3(GLA):c.404C>T (p.Ala135Val)

NM_000169.3(GLA):c.394G>A (p.Gly132Arg)

NM_000169.3(GLA):c.386T>C (p.Leu129Pro)

NM_000169.3(GLA):c.281G>A (p.Cys94Tyr)

NM_000169.3(GLA):c.254G>A (p.Gly85Asp)

NM_000169.3(GLA):c.154T>C (p.Cys52Arg)

NM_000169.3(GLA):c.153G>A (p.Met51Ile)

NM_000169.3(GLA):c.119C>T (p.Pro40Leu)

NM_000169.3(GLA):c.109G>C (p.Ala37Pro)

NM_000169.3(GLA):c.95T>C (p.Leu32Pro)

NM_000169.3(GLA):c.41T>C (p.Leu14Pro)

NM_000169.3(GLA):c.1235C>T (p.Thr412Ile)

NM_000169.3(GLA):c.1225C>T (p.Pro409Ser)

NM_000169.3(GLA):c.983G>A (p.Gly328Glu)

NM_000169.3(GLA):c.962A>G (p.Gln321Arg)

NM_000169.3(GLA):c.889T>C (p.Ser297Pro)

NM_000169.3(GLA):c.888G>T (p.Met296Ile)

NM_000169.3(GLA):c.887T>C (p.Met296Thr)

NM_000169.3(GLA):c.861G>T (p.Trp287Cys)

NM_000169.3(GLA):c.851T>C (p.Met284Thr)

NM_000169.3(GLA):c.828C>A (p.Ser276Arg)

NM_000169.3(GLA):c.812G>T (p.Gly271Val)

NM_000169.3(GLA):c.790G>T (p.Asp264Tyr)

NM_000169.3(GLA):c.782G>A (p.Gly261Asp)

NM_000169.3(GLA):c.708G>T (p.Trp236Cys)

NM_000169.3(GLA):c.704C>G (p.Ser235Cys)

NM_000169.3(GLA):c.688G>A (p.Ala230Thr)

NM_000169.3(GLA):c.674A>G (p.His225Arg)

NM_000169.3(GLA):c.671A>G (p.Asn224Ser)

NM_000169.3(GLA):c.667T>C (p.Cys223Arg)

NM_000169.3(GLA):c.620A>G (p.Tyr207Cys)

NM_000169.3(GLA):c.559A>G (p.Met187Val)

NM_000169.3(GLA):c.548G>T (p.Gly183Val)

NM_000169.3(GLA):c.515G>A (p.Cys172Tyr)

NM_000169.3(GLA):c.512G>A (p.Gly171Asp)

NM_000169.3(GLA):c.511G>A (p.Gly171Ser)

NM_000169.3(GLA):c.443G>A (p.Ser148Asn)

NM_000169.3(GLA):c.274G>A (p.Asp92Asn)

NM_000169.3(GLA):c.266T>G (p.Leu89Arg)

NM_000169.3(GLA):c.202C>T (p.Leu68Phe)

NM_000169.3(GLA):c.188G>A (p.Cys63Tyr)

NM_000169.3(GLA):c.167G>A (p.Cys56Tyr)

NM_000169.3(GLA):c.146G>C (p.Arg49Pro)

NM_000169.3(GLA):c.137A>C (p.His46Pro)

NM_000169.3(GLA):c.137A>G (p.His46Arg)

NM_000169.3(GLA):c.109G>A (p.Ala37Thr)

NM_000169.3(GLA):c.92C>T (p.Ala31Val)

NM_000169.3(GLA):c.47T>C (p.Leu16Pro)

NM_000169.3(GLA):c.1133G>A (p.Cys378Tyr)

Special Purpose Exit Company (SPEC)

Devinebio creates entities (SPECs) to develop drug assets for a specific indications. Five areas are monitored per each SPEC: population, biomarkers, leads, IP, and regulatory. A SPEC’s assets are moved through the milestones of preIND, IND, preNDA and NDA. As a drug asset progresses, it becomes de-risked and it increases in value. Once a drug asset has achieved IND-enabled status, it will have matured enough to be ready for partnering with Pharma.